OMIA group 1432
Retinal atrophy - Cone-rod dystrophy 4
The chain reaches the human disease cone-rod dystrophy 13, which Mondo defines as: “Any cone-rod dystrophy in which the cause of the disease is a mutation in the RPGRIP1 gene.” It reaches 1 more human disease, listed below.
The chain
From the animal disease to the drugs. The page shows what each step found and where the chain stopped. It does not say whether the animal is a model of a human disease.
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Animal disease
Reached
OMIA records it in 1 species entry marked as a defect.
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Human disease
Reached
2 Mondo diseases.
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Human gene
Reached
2 human genes.
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Target evidence
Reached
2 Open Targets associations, with a best score of 0.74.
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Drugs
Stopped here
No ChEMBL drug acts on a human gene of the group's target evidence.
The chain stopped at Drugs: No ChEMBL drug acts on a human gene of the group's target evidence.
Natural-model score
How complete and how well supported the chain to each human disease is, out of 100, by stated rules. It does not say that the animal is a validated model of the human disease. How the score works.
55.0 out of 100
| Part | Computed from | Points |
|---|---|---|
| Target evidence | Open Targets score of 0.74 | 26.0 of 35 |
| Drugs | No drug has been tested for this disease, and none acts on its genes | 0.0 of 25 |
| Ortholog | One to one ortholog | 20.0 of 20 |
| Both routes | One route found this disease | 5.0 of 10 |
| Species | 1 naturally occurring species entry marked as a defect | 4.0 of 10 |
54.6 out of 100
| Part | Computed from | Points |
|---|---|---|
| Target evidence | Open Targets score of 0.73 | 25.6 of 35 |
| Drugs | No drug has been tested for this disease, and none acts on its genes | 0.0 of 25 |
| Ortholog | One to one ortholog | 20.0 of 20 |
| Both routes | One route found this disease | 5.0 of 10 |
| Species | 1 naturally occurring species entry marked as a defect | 4.0 of 10 |
Species
The chain follows only the species entries that OMIA marks as a defect.
| Species | Scientific name | OMIA entry | A defect |
|---|---|---|---|
| dog | Canis lupus familiaris | OMIA:001432-9615 | Yes |
Genes
Each gene OMIA records for a species entry, and the human gene it reaches through Ensembl's orthologs.
| Species | Animal gene | Human gene | Ortholog |
|---|---|---|---|
| dog | MAP9 microtubule-associated protein 9 NCBI Gene 482662 | MAP9 Ensembl | one to one |
| dog | RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1 NCBI Gene 475400 | RPGRIP1 Ensembl | one to one |
Human diseases
Two routes lead from an OMIA group to a Mondo human disease: OMIA's own Mondo link, and the group's OMIM numbers through Mondo's cross-references.
- OMIA's own Mondo link: OMIA links the group to no Mondo disease.
- OMIA's OMIM numbers: found a disease.
| Mondo disease | Name | Found by |
|---|---|---|
| MONDO:0011987 | cone-rod dystrophy 13 Any cone-rod dystrophy in which the cause of the disease is a mutation in the RPGRIP1 gene. | OMIA's OMIM numbers |
| MONDO:0013446 | Leber congenital amaurosis 6 Any Leber congenital amaurosis in which the cause of the disease is a mutation in the RPGRIP1 gene. | OMIA's OMIM numbers |
Target evidence
Each Open Targets association between one of the group's human genes and one of its human diseases, with its overall score and the score for each kind of evidence.
| Human gene | Human disease | Score | Evidence | Kinds of evidence |
|---|---|---|---|---|
| RPGRIP1 | cone-rod dystrophy 13 | 0.74 | 1,021 | Genetic association 0.94 Genetic literature 0.78 Animal model 0.60 Literature 0.05 |
| RPGRIP1 | Leber congenital amaurosis 6 | 0.73 | 1,067 | Genetic association 0.94 Genetic literature 0.73 Animal model 0.57 Literature 0.12 |
Drugs
No ChEMBL drug acts on a human gene of the group's target evidence.